Documentation read from 05/19/2023 16:24:01 version of /vol/kmer-server-prod/FIGdisk.server.rhel6/FIG/bin/svr_all_genomes.



List the names and IDs of all the (complete) genomes.

There is no input. The output is a file of genome names and genome IDs.

------ Example: svr_all_genomes -complete > complete_genomes.tbl

would produce a 2-column table. The first column would contain the names of all complete genomes, and the second the IDs of those genomes. ------

Command-Line Options


The URL for the Sapling server, if it is to be different from the default.

    If TRUE, only complete genomes will be returned. The default is FALSE (return all genomes).
    If TRUE, only prokaryotic genomes will be returned.

Output Format

The standard output is a file where each line contains a genome name and a genome ID.