Documentation read from 01/15/2025 12:56:26 version of /vol/kmer-server-prod/FIGdisk.server.rhel6/FIG/bin/svr_all_genomes.
List the names and IDs of all the (complete) genomes.
There is no input. The output is a file of genome names and genome IDs.
------ Example: svr_all_genomes -complete > complete_genomes.tbl
would produce a 2-column table. The first column would contain the names of all complete genomes, and the second the IDs of those genomes. ------
The URL for the Sapling server, if it is to be different from the default.
If TRUE, only complete genomes will be returned. The default is FALSE (return all genomes).
If TRUE, only prokaryotic genomes will be returned.
The standard output is a file where each line contains a genome name and a genome ID.