Documentation read from 03/12/2019 12:09:20 version of /vol/kmer-server-prod/FIGdisk.server.rhel6/FIG/bin/svr_all_genomes.

svr_all_genomes

svr_all_genomes

List the names and IDs of all the (complete) genomes.

There is no input. The output is a file of genome names and genome IDs.

------ Example: svr_all_genomes -complete > complete_genomes.tbl

would produce a 2-column table. The first column would contain the names of all complete genomes, and the second the IDs of those genomes. ------

Command-Line Options

url

The URL for the Sapling server, if it is to be different from the default.

-complete
    If TRUE, only complete genomes will be returned. The default is FALSE (return all genomes).
-prokaryotic
    If TRUE, only prokaryotic genomes will be returned.

Output Format

The standard output is a file where each line contains a genome name and a genome ID.