Documentation read from 03/12/2019 12:09:20 version of /vol/kmer-server-prod/FIGdisk.server.rhel6/FIG/bin/svr_figfam_fasta.

svr_figfam_fasta

svr_figfam_fasta

    svr_figfam_fasta <figfam_ids.tbl >genes.fasta

Produce FASTA strings for FIGfams.

This script takes as input a tab-delimited file with FIGfam IDs at the end of each line. For each FIGfam ID, all the genes in the FIGfam are written to the output file in FASTA format. The FIGfam ID will be included as the FASTA comment.

This is a pipe command: the input is taken from the standard input and the output is to the standard output.

Command-Line Options

url

The URL for the Sapling server, if it is to be different from the default.

c

Column index. If specified, indicates that the input IDs should be taken from the indicated column instead of the last column. The first column is column 1.