Documentation read from 03/12/2019 12:09:21 version of /vol/kmer-server-prod/FIGdisk.server.rhel6/FIG/bin/svr_figfam_functions.

svr_figfam_functions

svr_figfam_functions

    svr_figfam_functions <figfam_ids.tbl >figfam_functions.tbl

Output the functions for the specified FIGfams.

This script takes as input a tab-delimited file with FIGfam IDs at the end of each line. For each FIGfam ID, the FIGfam's function will be appended to the list.

This is a pipe command: the input is taken from the standard input and the output is to the standard output. Alternatively, a list of FIGfan IDs can be specified as command-line parameters.

Command-Line Options

url

The URL for the Sapling server, if it is to be different from the default.

c

Column index. If specified, indicates that the input IDs should be taken from the indicated column instead of the last column. The first column is column 1.

all

Instead of reading FIGfam IDs from the input, all FIGfams will be listed.